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BioOffice BioOffice Ultra 2005 (10-User Lab Pack)by CambridgeSoft
Win
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BioOffice is the ultimate suite for managing biological data. It includes BioAssay, BioDraw, Chem3D, E-Notebook, ChemDraw and more.
BioOffice Ultra is the ultimate suite for managing biological data. It adds the ChemINDEX database, and Ultra levels of Inventory, ChemDraw and Chem3D, to what you get with BioOffice Pro.
Applications Included:
ChemDraw Std 9.0
Chem3D Ultra 9.0
ChemFinder Pro 9.0
BioAssay Ultra 9.0
BioViz/Office 9.0
BioDraw Ultra 9.0
Inventory Ultra 9.0
E-Notebook Ultra 9.0
Databases Included
(CD/DVD Databases are Windows Only)
ChemINDEX Ultra 9.0 Box Edition comes with - (W) 1 DVD with 3 Databases: ChemINDEX (small molecule physical property data 70,000+ compounds), ChemRXN (29,000+ organic reaction databases), NCI Database (200,000+ anti-cancer drug dose-response data), AIDS Database (NCI compiled for anti-viral compounds)
Subscription Edition comes with - (W/M) Online subscription to ChemINDEX
Features Included
Configurability / E-Notebook
(W) Design forms and add buttons that are tailored to your needs. (multiple-user configuration only)
AutoText / E-Notebook
(W) Share prewritten protocols that dynamically add data from the experiment.
BioViz/Office
The bio visualization add-on to ChemFinder allows you to create graphical representations of ChemFinder databases in order to identify trends and correlations within subsets of your data.
Molecular Modeling & Dynamics
Workstation quality molecular modeling.
MM2 & Tinker
Built in support for MM2 to generate realistic 3D structures.
Stereo Hardware Support
Use Chem3D with a variety of stereo monitors, shutterglasses, & other hardware to provide a true 3-dimentional modeling experience.
Object Specific Settings
Create drawings with different styles in different parts of the document.
Automatic Overlay
Select multiple molecules and let Chem3D automatically align them with a target molecule.
Dihedral Driver
New conformational analysis tool allows the generation of MM2 energy plots.
ChemDraw LiveLink
Simultaneous 2D & 3D editing! Draw structures using a ChemDraw window embedded in the Chem3D application. This powerful feature adds a 2D view that is always in-sync with the 3D view.
Model Explorer/Chem3D
Hierarchical tree-control for exploring the structure of large models. Import a PDB file and examine chains, groups, and ligands. This new feature gives fine-grained control.
Structure Drawing<>/b>
Draw chemical structures.
Graphical File Formats Enhanced
Import graphics stored in GIF, TIFF, PNG, JPEG, and BMP formats.
Chemical Warnings Enhanced
Mouse-over red box to read error description.
Drawing Elements / BioDraw
BioDraw makes it easy to draw high-quality pathways. Built-in shapes include: Enzymes, Receptors, 7-Helix Proteins, Ion Channels, Immunoglobins, Membranes (lines, arcs and ovals), DNA, Endoplasmic reticula, G-Proteins, Golgi bodies, Mitochondria, Small molecules, Reaction arrows, and more. You can also insert your own shapes, such as chemical structures from ChemDraw, crystallographic structures from PDB, etc.
Sharing Data / BioDraw
BioDraw pathways and annotation data are sharable with other researchers using BioDraw or the free Paracel BioDraw Reader. Anyone can download the free BioDraw Reader and view your pathways. Either send your colleagues the BioDraw file, or put it on your web site for them to download. Copy/Paste BioDraw drawings into PowerPoint presentations or Word documents or save pathways as TIFF for inclusion in major journals.
Annotations / BioDraw
Store annotations for each element in your drawing. Annotation data ranges from manually entered text to attached documents, literature references, or links.
Flexible Assay Management / BioAssay
Even for the most basic protein assays, the independent and dependent variables used by the biologist to quantify efficacy can vary substantially from assay to assay. The underlying requirement that follows from this variability is for a flexible data management system that can adapt quickly to different assays and biological models. With BioAssay, researchers or IT support staff simply define the observables and calculations that make up the assay. The database does the rest. Users can set up unlimited levels of drill-down.
User Friendly Data Retrieval & Analysis / BioAssay
This allows users, for example, to click an IC50 and see a graph of percent inhibition versus concentration. Click again, and the software displays the original triplicate results, with outliers marked. The software even supports complex in vivo models.
Automated Calculations & Curve Fitting / BioAssay
Once the database is configured for an assay, calculations are performed automatically whenever new data is entered or imported. Calculations can be quite complex, built from multi-step procedures. For an IC50 assay in triplicate, the software can average your triplicate results, take control values into account, and perform a sigmoidal dose-response curve fit according to your specifications. It is now as easy to do for 10,000 compounds as it is for ten.
Find Structure-Activity Relationships / BioAssay
Components of the ChemOffice product line provide additional ways to analyze structural and biological data and perform structure searches. ChemFinder makes it easy to create customized forms for viewing data. Users can export data to Excel or Spotfire for further analysis and reporting.
Extensive Data Types / E-Notebook
(W) Notebook pages include ChemDraw reaction schemes, Microsoft Word and Excel documents, and spectral data using the Galactic Spectral Control.
ChemDraw & Stoichiometry Calculations / E-Notebook
(W) Stoichiometric calculations are long and tedious. E-Notebook tackles this troublesome problem by performing the calculations for you, dependant upon the drawn reaction and other entered parameters.
Microsoft Office & Galactic Spectra / E-Notebook
(W) E-Notebook manages all the other kinds of data chemists store in their notebooks. For free-form data, you can include Microsoft Word or Excel documents. For spectral data, you can take advantage of the Galactic Spectral Control embedded in the notebook that allows for analysis and storage of hundreds of kinds of spectra files.
Searching / Inventory
Every field in a record, including chemical structure, molecular formula and molecular weight are searchable. The application includes a number of specially designed inventory search forms. Search results are returned in list form. Inventory Manager also gives users the ability to search over Registration System, and ChemACX Databases, to speed reagent purchasing decisions.
Container Management / Inventory
Containers are created to represent actual containers in your facility. Each container is assigned a unique barcode, which can be printed, using a customized format, from the Inventory interface. Updating your inventory becomes as easy as scanning barcodes into the system. Users are able to check in and out, move, split, and merge containers at will.
Duplicate Checking / Inventory
Duplicates are detected according to the key fields the user defines (e.g. structure, CAS number, and Substance Name).
Barcode Generation / Inventory
Assigns unique barcodes for each container in the system. Simply print the barcode and attach it to the container.
Cascading Location Model / Inventory
A fully cascading location model. Laboratories can decide for themselves the granularity of their locations. Some labs may define locations as wells on plates residing on shelves inside refrigerators, which, in turn, are found in laboratories. Another lab may decide to track reagents at the bench or cabinet level. Still, in other settings, it may suffice to track chemicals on a lab-by-lab basis.
Customized Report Generation / Creation / Inventory
Create reports of search results, or location contents in PDF or SNP format. Create your own report templates specific to your site's needs.
3D Glasses
(W) Included glasses provide enhanced stereo-mode with depth shadings to give realistic 3-dimensional quality to all Chem3D renderings.
Enhanced Graphics
(W) Chem3D uses openGL to provide high quality graphics display.
Structure Perspective Tool
Adjust the perspective of ChemDraw molecules with simple horizontal/vertical mouse movements.
Floating Character Map
Add special characters from any font instantly to any ChemDraw document.
Floating Periodic Table
Element information available at all times with floating periodic table on the desktop.
Atom Numbering
Add sequential numbering indicators to atoms in a structure.
ChemSAR/Excel
(W) Through Excel, access and display calculations performed in Chem3D.
GAMESS Client
(W) Adds GAMESS calculations to Chem3D with a direct client interface (note: user must obtain GAMESS separately).
ChemDraw/Excel
(W) Display and perform calculations on up to 1,400 chemical structures at a time in Excel.
ChemProp/Chem3D
(W) Advanced property parameter including BP, MP and more.
Multi-Page Docs
Create multiple page documents and posters within a single ChemDraw file.
Online Menu
(W) Draw a structure or model and immediately get online vendor information ChemACX.Com with the click of a button.
Stereochemistry
Identifies stereocenters using Cahn-Ingold Prelog rules.
ChemFinder/Office
(W) Search on your computer or network for chemical structures in Word, Excel, Powerpoint, ChemDraw, ISIS files and more, and browse, search, refine, or export your hit list to any destination.
ChemSAR
(W) ChemSAR is a Chem3D Windows add-in for MS Excel with descriptive statistics and plots for structure-activity relationships.
CLogP
CLogP property server provides the latest methodology for calculationg n-octanol/water partition coefficients.
Gaussian Client
(W) Adds Gaussian 98W calculations to Chem3D with a direct client interface (note: Gaussian 98W required).
CS MOPAC
Fujitsu's MOPAC 2000, available now through Chem3D's easy graphical interface. Calculate transition state geometries and physical properties using AM1, PM3, MNDO, MINDO/3, and new MNDO-d.
LabArt
Publication-quality EPS glassware art for use within your ChemDraw documents.
Professional Services Included:
30 Days of Telephone Support
Unlimited Email Support
System Requirements
Windows
2000, XP
BioOffice Ultra is the ultimate suite for managing biological data. It adds the ChemINDEX database, and Ultra levels of Inventory, ChemDraw and Chem3D, to what you get with BioOffice Pro.
Applications Included:
Databases Included
(CD/DVD Databases are Windows Only)
ChemINDEX Ultra 9.0 Box Edition comes with - (W) 1 DVD with 3 Databases: ChemINDEX (small molecule physical property data 70,000+ compounds), ChemRXN (29,000+ organic reaction databases), NCI Database (200,000+ anti-cancer drug dose-response data), AIDS Database (NCI compiled for anti-viral compounds)
Subscription Edition comes with - (W/M) Online subscription to ChemINDEX
Features Included
Configurability / E-Notebook
(W) Design forms and add buttons that are tailored to your needs. (multiple-user configuration only)
AutoText / E-Notebook
(W) Share prewritten protocols that dynamically add data from the experiment.
BioViz/Office
The bio visualization add-on to ChemFinder allows you to create graphical representations of ChemFinder databases in order to identify trends and correlations within subsets of your data.
Molecular Modeling & Dynamics
Workstation quality molecular modeling.
MM2 & Tinker
Built in support for MM2 to generate realistic 3D structures.
Stereo Hardware Support
Use Chem3D with a variety of stereo monitors, shutterglasses, & other hardware to provide a true 3-dimentional modeling experience.
Object Specific Settings
Create drawings with different styles in different parts of the document.
Automatic Overlay
Select multiple molecules and let Chem3D automatically align them with a target molecule.
Dihedral Driver
New conformational analysis tool allows the generation of MM2 energy plots.
ChemDraw LiveLink
Simultaneous 2D & 3D editing! Draw structures using a ChemDraw window embedded in the Chem3D application. This powerful feature adds a 2D view that is always in-sync with the 3D view.
Model Explorer/Chem3D
Hierarchical tree-control for exploring the structure of large models. Import a PDB file and examine chains, groups, and ligands. This new feature gives fine-grained control.
Structure Drawing<>/b>
Draw chemical structures.
Graphical File Formats Enhanced
Import graphics stored in GIF, TIFF, PNG, JPEG, and BMP formats.
Chemical Warnings Enhanced
Mouse-over red box to read error description.
Drawing Elements / BioDraw
BioDraw makes it easy to draw high-quality pathways. Built-in shapes include: Enzymes, Receptors, 7-Helix Proteins, Ion Channels, Immunoglobins, Membranes (lines, arcs and ovals), DNA, Endoplasmic reticula, G-Proteins, Golgi bodies, Mitochondria, Small molecules, Reaction arrows, and more. You can also insert your own shapes, such as chemical structures from ChemDraw, crystallographic structures from PDB, etc.
Sharing Data / BioDraw
BioDraw pathways and annotation data are sharable with other researchers using BioDraw or the free Paracel BioDraw Reader. Anyone can download the free BioDraw Reader and view your pathways. Either send your colleagues the BioDraw file, or put it on your web site for them to download. Copy/Paste BioDraw drawings into PowerPoint presentations or Word documents or save pathways as TIFF for inclusion in major journals.
Annotations / BioDraw
Store annotations for each element in your drawing. Annotation data ranges from manually entered text to attached documents, literature references, or links.
Flexible Assay Management / BioAssay
Even for the most basic protein assays, the independent and dependent variables used by the biologist to quantify efficacy can vary substantially from assay to assay. The underlying requirement that follows from this variability is for a flexible data management system that can adapt quickly to different assays and biological models. With BioAssay, researchers or IT support staff simply define the observables and calculations that make up the assay. The database does the rest. Users can set up unlimited levels of drill-down.
User Friendly Data Retrieval & Analysis / BioAssay
This allows users, for example, to click an IC50 and see a graph of percent inhibition versus concentration. Click again, and the software displays the original triplicate results, with outliers marked. The software even supports complex in vivo models.
Automated Calculations & Curve Fitting / BioAssay
Once the database is configured for an assay, calculations are performed automatically whenever new data is entered or imported. Calculations can be quite complex, built from multi-step procedures. For an IC50 assay in triplicate, the software can average your triplicate results, take control values into account, and perform a sigmoidal dose-response curve fit according to your specifications. It is now as easy to do for 10,000 compounds as it is for ten.
Find Structure-Activity Relationships / BioAssay
Components of the ChemOffice product line provide additional ways to analyze structural and biological data and perform structure searches. ChemFinder makes it easy to create customized forms for viewing data. Users can export data to Excel or Spotfire for further analysis and reporting.
Extensive Data Types / E-Notebook
(W) Notebook pages include ChemDraw reaction schemes, Microsoft Word and Excel documents, and spectral data using the Galactic Spectral Control.
ChemDraw & Stoichiometry Calculations / E-Notebook
(W) Stoichiometric calculations are long and tedious. E-Notebook tackles this troublesome problem by performing the calculations for you, dependant upon the drawn reaction and other entered parameters.
Microsoft Office & Galactic Spectra / E-Notebook
(W) E-Notebook manages all the other kinds of data chemists store in their notebooks. For free-form data, you can include Microsoft Word or Excel documents. For spectral data, you can take advantage of the Galactic Spectral Control embedded in the notebook that allows for analysis and storage of hundreds of kinds of spectra files.
Searching / Inventory
Every field in a record, including chemical structure, molecular formula and molecular weight are searchable. The application includes a number of specially designed inventory search forms. Search results are returned in list form. Inventory Manager also gives users the ability to search over Registration System, and ChemACX Databases, to speed reagent purchasing decisions.
Container Management / Inventory
Containers are created to represent actual containers in your facility. Each container is assigned a unique barcode, which can be printed, using a customized format, from the Inventory interface. Updating your inventory becomes as easy as scanning barcodes into the system. Users are able to check in and out, move, split, and merge containers at will.
Duplicate Checking / Inventory
Duplicates are detected according to the key fields the user defines (e.g. structure, CAS number, and Substance Name).
Barcode Generation / Inventory
Assigns unique barcodes for each container in the system. Simply print the barcode and attach it to the container.
Cascading Location Model / Inventory
A fully cascading location model. Laboratories can decide for themselves the granularity of their locations. Some labs may define locations as wells on plates residing on shelves inside refrigerators, which, in turn, are found in laboratories. Another lab may decide to track reagents at the bench or cabinet level. Still, in other settings, it may suffice to track chemicals on a lab-by-lab basis.
Customized Report Generation / Creation / Inventory
Create reports of search results, or location contents in PDF or SNP format. Create your own report templates specific to your site's needs.
3D Glasses
(W) Included glasses provide enhanced stereo-mode with depth shadings to give realistic 3-dimensional quality to all Chem3D renderings.
Enhanced Graphics
(W) Chem3D uses openGL to provide high quality graphics display.
Structure Perspective Tool
Adjust the perspective of ChemDraw molecules with simple horizontal/vertical mouse movements.
Floating Character Map
Add special characters from any font instantly to any ChemDraw document.
Floating Periodic Table
Element information available at all times with floating periodic table on the desktop.
Atom Numbering
Add sequential numbering indicators to atoms in a structure.
ChemSAR/Excel
(W) Through Excel, access and display calculations performed in Chem3D.
GAMESS Client
(W) Adds GAMESS calculations to Chem3D with a direct client interface (note: user must obtain GAMESS separately).
ChemDraw/Excel
(W) Display and perform calculations on up to 1,400 chemical structures at a time in Excel.
ChemProp/Chem3D
(W) Advanced property parameter including BP, MP and more.
Multi-Page Docs
Create multiple page documents and posters within a single ChemDraw file.
Online Menu
(W) Draw a structure or model and immediately get online vendor information ChemACX.Com with the click of a button.
Stereochemistry
Identifies stereocenters using Cahn-Ingold Prelog rules.
ChemFinder/Office
(W) Search on your computer or network for chemical structures in Word, Excel, Powerpoint, ChemDraw, ISIS files and more, and browse, search, refine, or export your hit list to any destination.
ChemSAR
(W) ChemSAR is a Chem3D Windows add-in for MS Excel with descriptive statistics and plots for structure-activity relationships.
CLogP
CLogP property server provides the latest methodology for calculationg n-octanol/water partition coefficients.
Gaussian Client
(W) Adds Gaussian 98W calculations to Chem3D with a direct client interface (note: Gaussian 98W required).
CS MOPAC
Fujitsu's MOPAC 2000, available now through Chem3D's easy graphical interface. Calculate transition state geometries and physical properties using AM1, PM3, MNDO, MINDO/3, and new MNDO-d.
LabArt
Publication-quality EPS glassware art for use within your ChemDraw documents.
Professional Services Included:
System Requirements
Windows